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. /** * Datasets manager. * * @package core_analytics * @copyright 2016 David Monllao {@link http://www.davidmonllao.com} * @license http://www.gnu.org/copyleft/gpl.html GNU GPL v3 or later */ namespace core_analytics; defined('MOODLE_INTERNAL') || die(); /** * Datasets manager. * * @package core_analytics * @copyright 2016 David Monllao {@link http://www.davidmonllao.com} * @license http://www.gnu.org/copyleft/gpl.html GNU GPL v3 or later */ class dataset_manager { /** * File area for labelled datasets. */ const LABELLED_FILEAREA = 'labelled'; /** * File area for unlabelled datasets. */ const UNLABELLED_FILEAREA = 'unlabelled'; /** * File area for exported datasets. */ const EXPORT_FILEAREA = 'export'; /** * Evaluation file file name. */ const EVALUATION_FILENAME = 'evaluation.csv'; /** * The model id. * * @var int */ protected $modelid; /** * Range processor in use. * * @var string */ protected $timesplittingid; /** * @var int */ protected $analysableid; /** * Whether this is a dataset for evaluation or not. * * @var bool */ protected $evaluation; /** * The dataset filearea. Must be one of the self::*_FILEAREA options. * * @var string */ protected $filearea; /** * Constructor method. * * @throws \coding_exception * @param int $modelid * @param int $analysableid * @param string $timesplittingid * @param string $filearea * @param bool $evaluation * @return void */ public function __construct($modelid, $analysableid, $timesplittingid, $filearea, $evaluation = false) { if ($filearea !== self::EXPORT_FILEAREA && $filearea !== self::LABELLED_FILEAREA && $filearea !== self::UNLABELLED_FILEAREA) { throw new \coding_exception('Invalid provided filearea'); } $this->modelid = $modelid; $this->analysableid = $analysableid; $this->timesplittingid = $timesplittingid; $this->filearea = $filearea; $this->evaluation = $evaluation; } /** * Store the dataset in the internal file system. * * @param array $data * @return \stored_file */ public function store($data) { // Delete previous file if it exists. $fs = get_file_storage(); $filerecord = [ 'component' => 'analytics', 'filearea' => $this->filearea, 'itemid' => $this->modelid, 'contextid' => \context_system::instance()->id, 'filepath' => '/analysable/' . $this->analysableid . '/' . \core_analytics\analysis::clean_time_splitting_id($this->timesplittingid) . '/', 'filename' => self::get_filename($this->evaluation) ]; // Delete previous and old (we already checked that previous copies are not recent) evaluation files for this analysable. if ($this->evaluation) { $select = " = {$filerecord['itemid']} AND filepath = :filepath"; $fs->delete_area_files_select($filerecord['contextid'], $filerecord['component'], $filerecord['filearea'], $select, array('filepath' => $filerecord['filepath'])); } // Write all this stuff to a tmp file. $filepath = make_request_directory() . DIRECTORY_SEPARATOR . $filerecord['filename']; $fh = fopen($filepath, 'w+'); if (!$fh) { return false; } foreach ($data as $line) { fputcsv($fh, $line); } fclose($fh); return $fs->create_file_from_pathname($filerecord, $filepath); } /** * Returns the previous evaluation file. * * Important to note that this is per modelid + timesplittingid, when dealing with multiple * analysables this is the merged file. Do not confuse with self::get_evaluation_analysable_file * * @param int $modelid * @param string $timesplittingid * @return \stored_file */ public static function get_previous_evaluation_file($modelid, $timesplittingid) { $fs = get_file_storage(); // Evaluation data is always labelled. $filepath = '/timesplitting/' . \core_analytics\analysis::clean_time_splitting_id($timesplittingid) . '/'; return $fs->get_file(\context_system::instance()->id, 'analytics', self::LABELLED_FILEAREA, $modelid, $filepath, self::EVALUATION_FILENAME); } /** * Gets the list of files that couldn't be previously used for training and prediction. * * @param int $modelid * @param bool $includetarget * @param string[] $timesplittingids * @return null */ public static function get_pending_files($modelid, $includetarget, $timesplittingids) { global $DB; $fs = get_file_storage(); if ($includetarget) { $filearea = self::LABELLED_FILEAREA; $usedfileaction = 'trained'; } else { $filearea = self::UNLABELLED_FILEAREA; $usedfileaction = 'predicted'; } $select = 'modelid = :modelid AND action = :action'; $params = array('modelid' => $modelid, 'action' => $usedfileaction); $usedfileids = $DB->get_fieldset_select('analytics_used_files', 'fileid', $select, $params); // Very likely that we will only have 1 time splitting method here. $filesbytimesplitting = array(); foreach ($timesplittingids as $timesplittingid) { $filepath = '/timesplitting/' . \core_analytics\analysis::clean_time_splitting_id($timesplittingid) . '/'; $files = $fs->get_directory_files(\context_system::instance()->id, 'analytics', $filearea, $modelid, $filepath); foreach ($files as $file) { // Discard evaluation files. if ($file->get_filename() === self::EVALUATION_FILENAME) { continue; } // No dirs. if ($file->is_directory()) { continue; } // Already used for training. if (in_array($file->get_id(), $usedfileids)) { continue; } $filesbytimesplitting[$timesplittingid][] = $file; } } return $filesbytimesplitting; } /** * Deletes previous evaluation files of this model. * * @param int $modelid * @param string $timesplittingid * @return bool */ public static function delete_previous_evaluation_file($modelid, $timesplittingid) { if ($file = self::get_previous_evaluation_file($modelid, $timesplittingid)) { $file->delete(); return true; } return false; } /** * Returns this (model + analysable + time splitting) file. * * @param int $modelid * @param int $analysableid * @param string $timesplittingid * @return \stored_file */ public static function get_evaluation_analysable_file($modelid, $analysableid, $timesplittingid) { // Delete previous file if it exists. $fs = get_file_storage(); // Always evaluation.csv and labelled as it is an evaluation file. $filearea = self::LABELLED_FILEAREA; $filename = self::get_filename(true); $filepath = '/analysable/' . $analysableid . '/' . \core_analytics\analysis::clean_time_splitting_id($timesplittingid) . '/'; return $fs->get_file(\context_system::instance()->id, 'analytics', $filearea, $modelid, $filepath, $filename); } /** * Merge multiple files into one. * * Important! It is the caller responsability to ensure that the datasets are compatible. * * @param array $files * @param int $modelid * @param string $timesplittingid * @param string $filearea * @param bool $evaluation * @return \stored_file */ public static function merge_datasets(array $files, $modelid, $timesplittingid, $filearea, $evaluation = false) { $tmpfilepath = make_request_directory() . DIRECTORY_SEPARATOR . 'tmpfile.csv'; // Add headers. // We could also do this with a single iteration gathering all files headers and appending them to the beginning of the file // once all file contents are merged. $varnames = ''; $analysablesvalues = array(); foreach ($files as $file) { $rh = $file->get_content_file_handle(); // Copy the var names as they are, all files should have the same var names. $varnames = fgetcsv($rh); $analysablesvalues[] = fgetcsv($rh); // Copy the columns as they are, all files should have the same columns. $columns = fgetcsv($rh); } // Merge analysable values skipping the ones that are the same in all analysables. $values = array(); foreach ($analysablesvalues as $analysablevalues) { foreach ($analysablevalues as $varkey => $value) { // Sha1 to make it unique. $values[$varkey][sha1($value)] = $value; } } foreach ($values as $varkey => $varvalues) { $values[$varkey] = implode('|', $varvalues); } // Start writing to the merge file. $wh = fopen($tmpfilepath, 'w'); if (!$wh) { throw new \moodle_exception('errorcannotwritedataset', 'analytics', '', $tmpfilepath); } fputcsv($wh, $varnames); fputcsv($wh, $values); fputcsv($wh, $columns); // Iterate through all files and add them to the tmp one. We don't want file contents in memory. foreach ($files as $file) { $rh = $file->get_content_file_handle(); // Skip headers. fgets($rh); fgets($rh); fgets($rh); // Copy all the following lines. while ($line = fgets($rh)) { fwrite($wh, $line); } fclose($rh); } fclose($wh); $filerecord = [ 'component' => 'analytics', 'filearea' => $filearea, 'itemid' => $modelid, 'contextid' => \context_system::instance()->id, 'filepath' => '/timesplitting/' . \core_analytics\analysis::clean_time_splitting_id($timesplittingid) . '/', 'filename' => self::get_filename($evaluation) ]; $fs = get_file_storage(); return $fs->create_file_from_pathname($filerecord, $tmpfilepath); } /** * Exports the model training data. * * @param int $modelid * @param string $timesplittingid * @return \stored_file|false */ public static function export_training_data($modelid, $timesplittingid) { $fs = get_file_storage(); $contextid = \context_system::instance()->id; $filepath = '/timesplitting/' . \core_analytics\analysis::clean_time_splitting_id($timesplittingid) . '/'; $files = $fs->get_directory_files($contextid, 'analytics', self::LABELLED_FILEAREA, $modelid, $filepath, true, false); // Discard evaluation files. foreach ($files as $key => $file) { if ($file->get_filename() === self::EVALUATION_FILENAME) { unset($files[$key]); } } if (empty($files)) { return false; } return self::merge_datasets($files, $modelid, $timesplittingid, self::EXPORT_FILEAREA); } /** * Returns the dataset file data structured by sampleids using the indicators and target column names. * * @param \stored_file $dataset * @return array */ public static function get_structured_data(\stored_file $dataset) { if ($dataset->get_filearea() !== 'unlabelled') { throw new \coding_exception('Sorry, only support for unlabelled data'); } $rh = $dataset->get_content_file_handle(); // Skip dataset info. fgets($rh); fgets($rh); $calculations = array(); $headers = fgetcsv($rh); // Get rid of the sampleid column name. array_shift($headers); while ($columns = fgetcsv($rh)) { $uniquesampleid = array_shift($columns); // Unfortunately fgetcsv does not respect line's var types. $calculations[$uniquesampleid] = array_map(function($value) { if ($value === '') { // We really want them as null because converted to float become 0 // and we need to treat the values separately. return null; } else if (is_numeric($value)) { return floatval($value); } return $value; }, array_combine($headers, $columns)); } return $calculations; } /** * Delete all files of a model. * * @param int $modelid * @return bool */ public static function clear_model_files($modelid) { $fs = get_file_storage(); return $fs->delete_area_files(\context_system::instance()->id, 'analytics', false, $modelid); } /** * Returns the file name to be used. * * @param strinbool $evaluation * @return string */ protected static function get_filename($evaluation) { if ($evaluation === true) { $filename = self::EVALUATION_FILENAME; } else { // Incremental time, the lock will make sure we don't have concurrency problems. $filename = microtime(true) . '.csv'; } return $filename; } }